HL_6XIR_006

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

6XIR|1|1|U|210, 6XIR|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0715

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6XIR|1|1|C|208
6XIR|1|1|A|209
6XIR|1|1|U|210
6XIR|1|1|A|211
6XIR|1|1|G|212

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain C

RPL4A isoform 1

Chain Y

60S ribosomal protein L26-A