HL_6XIR_012
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGUUUUGUAUUUCAC
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|1|U|447, 6XIR|1|1|U|448, 6XIR|1|1|U|489
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_012 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2932
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XIR|1|1|G|443
6XIR|1|1|U|444
6XIR|1|1|G|445
6XIR|1|1|U|446
6XIR|1|1|U|447
6XIR|1|1|U|448
6XIR|1|1|U|449
6XIR|1|1|G|450
6XIR|1|1|U|451
6XIR|1|1|A|486
6XIR|1|1|U|487
6XIR|1|1|U|488
6XIR|1|1|U|489
6XIR|1|1|C|490
6XIR|1|1|A|491
6XIR|1|1|C|492
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
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