HL_6XIR_015
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6XIR|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_015 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.113
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6XIR|1|1|U|640
6XIR|1|1|C|641
6XIR|1|1|U|642
6XIR|1|1|U|643
6XIR|1|1|G|644
6XIR|1|1|A|645
6XIR|1|1|A|646
6XIR|1|1|A|647
6XIR|1|1|C|648
6XIR|1|1|A|649
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain a
- 60S ribosomal protein L28
- Chain e
- RPL32 isoform 1
Coloring options: