HL_6XIR_023

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6XIR|1|1|C|959, 6XIR|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.3031

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XIR|1|1|C|958
6XIR|1|1|C|959
6XIR|1|1|U|960
6XIR|1|1|C|961
6XIR|1|1|A|962
6XIR|1|1|G|963

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L28

Chain b

RPL29 isoform 1

Chain o

60S ribosomal protein L42-A