HL_6XIR_027

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_027 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.138

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|G|1148
6XIR|1|1|G|1149
6XIR|1|1|A|1150
6XIR|1|1|U|1151
6XIR|1|1|G|1152
6XIR|1|1|A|1153
6XIR|1|1|A|1154
6XIR|1|1|C|1155

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L7-A

Chain e

RPL32 isoform 1

Chain f

60S ribosomal protein L33-A