HL_6XIR_039

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6XIR|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_039 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3101

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6XIR|1|1|C|1759
6XIR|1|1|A|1760
6XIR|1|1|C|1761
6XIR|1|1|C|1762
6XIR|1|1|U|1763
6XIR|1|1|U|1764
6XIR|1|1|U|1765
6XIR|1|1|G|1766

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A