HL_6XIR_048

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_048 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3344

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XIR|1|1|A|2219
6XIR|1|1|A|2220
6XIR|1|1|G|2221
6XIR|1|1|A|2222
6XIR|1|1|A|2223
6XIR|1|1|A|2224
6XIR|1|1|U|2225
6XIR|1|1|U|2226

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain i

60S ribosomal protein L36-A

Chain o

60S ribosomal protein L42-A