HL_6XIR_070

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

6XIR|1|1|A|3243, 6XIR|1|1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.1228

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|C|3240
6XIR|1|1|G|3241
6XIR|1|1|G|3242
6XIR|1|1|A|3243
6XIR|1|1|A|3244
6XIR|1|1|A|3245
6XIR|1|1|G|3246
6XIR|1|1|G|3247

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain O

60S ribosomal protein L16-A