HL_6XIR_076

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUUGG

Length

7 nucleotides

Bulged bases

6XIR|1|2|C|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_076 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2461

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XIR|1|2|C|190
6XIR|1|2|C|191
6XIR|1|2|U|192
6XIR|1|2|U|193
6XIR|1|2|U|194
6XIR|1|2|G|195
6XIR|1|2|G|196

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain y

RPS8A isoform 1