HL_6XIR_079

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6XIR|1|2|U|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_079 not in the Motif Atlas

Homologous match to HL_8C3A_198

Geometric discrepancy: 0.5149

The information below is about HL_8C3A_198

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_46878.1

Basepair signature

cWW-F

Number of instances in this motif group

30

Unit IDs

6XIR|1|2|C|276
6XIR|1|2|U|277
6XIR|1|2|U|278
6XIR|1|2|G|279

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A