HL_6XIR_081
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_081 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.2756
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6XIR|1|2|U|368
6XIR|1|2|A|369
6XIR|1|2|A|370
6XIR|1|2|G|371
6XIR|1|2|G|372
6XIR|1|2|G|373
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S11-A
- Chain AM
- RPS22A isoform 1
- Chain s
- RPS2 isoform 1
- Chain z
- 40S ribosomal protein S9-A
Coloring options: