HL_6XIR_105
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6XIR|1|2|U|1557, 6XIR|1|2|U|1558, 6XIR|1|2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_105 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.3854
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6XIR|1|2|A|1550
6XIR|1|2|U|1551
6XIR|1|2|U|1552
6XIR|1|2|G|1553
6XIR|1|2|U|1554
6XIR|1|2|A|1555
6XIR|1|2|A|1556
6XIR|1|2|U|1557
6XIR|1|2|U|1558
6XIR|1|2|A|1559
6XIR|1|2|U|1560
6XIR|1|2|U|1561
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- RPS15 isoform 1
- Chain AI
- 40S ribosomal protein S18-A
- Chain AJ
- 40S ribosomal protein S19-A
- Chain AT
- RPS29A isoform 1
Coloring options: