HL_6XIR_117

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6XIR|1|AZ|U|16, 6XIR|1|AZ|U|17, 6XIR|1|AZ|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_117 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.4909

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6XIR|1|AZ|C|13
6XIR|1|AZ|A|14
6XIR|1|AZ|G|15
6XIR|1|AZ|U|16
6XIR|1|AZ|U|17
6XIR|1|AZ|G|18
6XIR|1|AZ|G|19
6XIR|1|AZ|G|20
6XIR|1|AZ|A|21
6XIR|1|AZ|G|22

Current chains

Chain AZ

Transfer RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AF

RPS15 isoform 1

Chain J

RPL11B isoform 1