HL_6XQE_174

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6XQE|1|2A|G|2751, 6XQE|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQE_174 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1348

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6XQE|1|2A|C|2745
6XQE|1|2A|U|2746
6XQE|1|2A|G|2747
6XQE|1|2A|A|2748
6XQE|1|2A|A|2749
6XQE|1|2A|A|2750
6XQE|1|2A|G|2751
6XQE|1|2A|C|2752
6XQE|1|2A|A|2753
6XQE|1|2A|U|2754
6XQE|1|2A|C|2755
6XQE|1|2A|U|2756
6XQE|1|2A|A|2757
6XQE|1|2A|A|2758
6XQE|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6