HL_6XYW_021

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGUGGCAAAA

Length

10 nucleotides

Bulged bases

6XYW|1|1|G|891, 6XYW|1|1|A|895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_021 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.2131

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

6XYW|1|1|U|888
6XYW|1|1|G|889
6XYW|1|1|U|890
6XYW|1|1|G|891
6XYW|1|1|G|892
6XYW|1|1|C|893
6XYW|1|1|A|894
6XYW|1|1|A|895
6XYW|1|1|A|896
6XYW|1|1|A|897

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain As

AT1G52370 protein