HL_6XYW_039

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AGAGUAU

Length

7 nucleotides

Bulged bases

6XYW|1|1|U|1969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_039 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.2481

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XYW|1|1|A|1965
6XYW|1|1|G|1966
6XYW|1|1|A|1967
6XYW|1|1|G|1968
6XYW|1|1|U|1969
6XYW|1|1|A|1970
6XYW|1|1|U|1971

Current chains

Chain 1

RNA (2842-MER)

Nearby chains