HL_6XYW_043

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6XYW|1|1|A|2097, 6XYW|1|1|U|2098, 6XYW|1|1|U|2099, 6XYW|1|1|A|2103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_043 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1407

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6XYW|1|1|U|2094
6XYW|1|1|U|2095
6XYW|1|1|U|2096
6XYW|1|1|A|2097
6XYW|1|1|U|2098
6XYW|1|1|U|2099
6XYW|1|1|A|2100
6XYW|1|1|A|2101
6XYW|1|1|A|2102
6XYW|1|1|A|2103
6XYW|1|1|A|2104

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein