HL_6XYW_047
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAUAAGUAG
- Length
- 9 nucleotides
- Bulged bases
- 6XYW|1|1|A|2263, 6XYW|1|1|U|2266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_047 not in the Motif Atlas
- Homologous match to HL_7A0S_048
- Geometric discrepancy: 0.2157
- The information below is about HL_7A0S_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61418.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6XYW|1|1|C|2260
6XYW|1|1|A|2261
6XYW|1|1|U|2262
6XYW|1|1|A|2263
6XYW|1|1|A|2264
6XYW|1|1|G|2265
6XYW|1|1|U|2266
6XYW|1|1|A|2267
6XYW|1|1|G|2268
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ak
- 50S ribosomal protein HLP, mitochondrial
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