HL_6XYW_082

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6XYW|1|2|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_082 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.2033

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6XYW|1|2|G|783
6XYW|1|2|A|784
6XYW|1|2|U|785
6XYW|1|2|U|786
6XYW|1|2|A|787
6XYW|1|2|G|788
6XYW|1|2|A|789
6XYW|1|2|U|790
6XYW|1|2|A|791
6XYW|1|2|C|792
6XYW|1|2|C|793

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Bj

Probable ribosomal protein S11, mitochondrial

Chain Bs

Ribosomal protein S21 family protein