3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
6XZ7|1|A|A|751, 6XZ7|1|A|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZ7_022 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0452
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6XZ7|1|A|U|744
6XZ7|1|A|1MG|745
6XZ7|1|A|PSU|746
6XZ7|1|A|5MU|747
6XZ7|1|A|G|748
6XZ7|1|A|A|749
6XZ7|1|A|A|750
6XZ7|1|A|A|751
6XZ7|1|A|A|752
6XZ7|1|A|A|753

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain S
50S ribosomal protein L22
Chain a
50S ribosomal protein L32
Chain c
50S ribosomal protein L34

Coloring options:


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