HL_6XZA_003

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.0876

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZA|1|A1|G|158
6XZA|1|A1|G|159
6XZA|1|A1|A|160
6XZA|1|A1|A|161
6XZA|1|A1|A|162
6XZA|1|A1|C|163

Current chains

Chain A1

16S rRNA

Nearby chains

Chain P2

50S ribosomal protein L19

Chain T1

30S ribosomal protein S20