HL_6XZA_016

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_016 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0887

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZA|1|A1|C|726
6XZA|1|A1|G|727
6XZA|1|A1|A|728
6XZA|1|A1|A|729
6XZA|1|A1|G|730
6XZA|1|A1|G|731

Current chains

Chain A1

16S rRNA

Nearby chains

Chain O1

30S ribosomal protein S15

Chain U1

30S ribosomal protein S21