HL_6XZA_021

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUAACGC

Length

8 nucleotides

Bulged bases

6XZA|1|A1|A|968, 6XZA|1|A1|G|971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1081

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XZA|1|A1|G|963
6XZA|1|A1|A|964
6XZA|1|A1|U|965
6XZA|1|A1|A|968
6XZA|1|A1|A|969
6XZA|1|A1|C|970
6XZA|1|A1|G|971
6XZA|1|A1|C|972

Current chains

Chain A1

16S rRNA

Nearby chains

Chain I1

30S ribosomal protein S9

Chain J1

30S ribosomal protein S10

Chain M1

30S ribosomal protein S13