HL_6XZA_025

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6XZA|1|A1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0711

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6XZA|1|A1|G|1089
6XZA|1|A1|U|1090
6XZA|1|A1|U|1091
6XZA|1|A1|A|1092
6XZA|1|A1|A|1093
6XZA|1|A1|G|1094
6XZA|1|A1|U|1095
6XZA|1|A1|C|1096

Current chains

Chain A1

16S rRNA

Nearby chains

Chain B1

30S ribosomal protein S2

Chain G1

30S ribosomal protein S7