HL_6XZA_048

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_048 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2868

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|G|543
6XZA|1|A2|C|544
6XZA|1|A2|U|545
6XZA|1|A2|U|546
6XZA|1|A2|A|547
6XZA|1|A2|G|548
6XZA|1|A2|G|549
6XZA|1|A2|C|550

Current chains

Chain A2

23S rRNA

Nearby chains

Chain J2

50S ribosomal protein L13