HL_6XZA_064

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_064 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0772

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6XZA|1|A2|G|1281
6XZA|1|A2|U|1282
6XZA|1|A2|G|1283
6XZA|1|A2|A|1284
6XZA|1|A2|A|1285
6XZA|1|A2|A|1286
6XZA|1|A2|A|1287
6XZA|1|A2|G|1288
6XZA|1|A2|C|1289

Current chains

Chain A2

23S rRNA

Nearby chains

Chain N2

50S ribosomal protein L17

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32