HL_6XZA_068

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6XZA|1|A2|A|1453, 6XZA|1|A2|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_068 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0753

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6XZA|1|A2|C|1451
6XZA|1|A2|G|1452
6XZA|1|A2|A|1453
6XZA|1|A2|C|1454
6XZA|1|A2|G|1455
6XZA|1|A2|G|1456
6XZA|1|A2|U|1457
6XZA|1|A2|U|1458
6XZA|1|A2|G|1459

Current chains

Chain A2

23S rRNA

Nearby chains

Chain N2

50S ribosomal protein L17