HL_6XZA_080

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6XZA|1|A2|A|1913, 6XZA|1|A2|C|1914, 6XZA|1|A2|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_080 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0982

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|G|1910
6XZA|1|A2|PSU|1911
6XZA|1|A2|A|1912
6XZA|1|A2|A|1913
6XZA|1|A2|C|1914
6XZA|1|A2|3TD|1915
6XZA|1|A2|A|1916
6XZA|1|A2|PSU|1917
6XZA|1|A2|A|1918
6XZA|1|A2|A|1919
6XZA|1|A2|C|1920

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain f2

Transfer RNA; tRNA