HL_6XZA_081

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6XZA|1|A2|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_081 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0527

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6XZA|1|A2|G|1949
6XZA|1|A2|G|1950
6XZA|1|A2|U|1951
6XZA|1|A2|A|1952
6XZA|1|A2|A|1953
6XZA|1|A2|G|1954
6XZA|1|A2|U|1955
6XZA|1|A2|U|1956
6XZA|1|A2|C|1957

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain K2

50S ribosomal protein L14