HL_6XZA_087

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_087 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.0753

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6XZA|1|A2|G|2303
6XZA|1|A2|G|2304
6XZA|1|A2|U|2305
6XZA|1|A2|C|2306
6XZA|1|A2|G|2307
6XZA|1|A2|G|2308
6XZA|1|A2|A|2309
6XZA|1|A2|C|2310
6XZA|1|A2|A|2311
6XZA|1|A2|U|2312
6XZA|1|A2|C|2313

Current chains

Chain A2

23S rRNA

Nearby chains

Chain F2

50S ribosomal protein L5