HL_6XZA_093

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6XZA|1|A2|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_093 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0694

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6XZA|1|A2|U|2528
6XZA|1|A2|G|2529
6XZA|1|A2|A|2530
6XZA|1|A2|A|2531
6XZA|1|A2|G|2532
6XZA|1|A2|U|2533
6XZA|1|A2|A|2534
6XZA|1|A2|G|2535

Current chains

Chain A2

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain e2

50S ribosomal protein L36