HL_6XZA_105
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6XZA|1|f2|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XZA_105 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0572
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
6XZA|1|f2|G|31
6XZA|1|f2|5MC|32
6XZA|1|f2|U|33
6XZA|1|f2|C|34
6XZA|1|f2|A|35
6XZA|1|f2|U|36
6XZA|1|f2|A|37
6XZA|1|f2|A|38
6XZA|1|f2|C|39
Current chains
- Chain f2
- Deacylated tRNAi(Met)
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain I1
- 30S ribosomal protein S9
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