HL_6XZA_108

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6XZA|1|A2|U|958, 6XZA|1|A2|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_108 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0702

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZA|1|A2|PSU|955
6XZA|1|A2|G|956
6XZA|1|A2|C|957
6XZA|1|A2|U|958
6XZA|1|A2|A|959
6XZA|1|A2|A|960
6XZA|1|A2|C|961
6XZA|1|A2|G|962

Current chains

Chain A2

23S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain M2

50S ribosomal protein L16