HL_6XZB_044

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6XZB|1|A2|G|386, 6XZB|1|A2|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_044 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0715

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6XZB|1|A2|A|382
6XZB|1|A2|C|383
6XZB|1|A2|A|384
6XZB|1|A2|C|385
6XZB|1|A2|G|386
6XZB|1|A2|U|387
6XZB|1|A2|G|388
6XZB|1|A2|G|389
6XZB|1|A2|U|390
6XZB|1|A2|A|391
6XZB|1|A2|U|392

Current chains

Chain A2

23S rRNA

Nearby chains

Chain X2

50S ribosomal protein L28