3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
6XZB|1|A2|A|751, 6XZB|1|A2|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_054 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.0452
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6XZB|1|A2|U|744
6XZB|1|A2|1MG|745
6XZB|1|A2|PSU|746
6XZB|1|A2|5MU|747
6XZB|1|A2|G|748
6XZB|1|A2|A|749
6XZB|1|A2|A|750
6XZB|1|A2|A|751
6XZB|1|A2|A|752
6XZB|1|A2|A|753

Current chains

Chain A2
23S rRNA

Nearby chains

Chain D2
50S ribosomal protein L3
Chain S2
50S ribosomal protein L22
Chain a2
50S ribosomal protein L32
Chain c2
50S ribosomal protein L34

Coloring options:


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