HL_6XZB_104

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6XZB|1|f2|G|18, 6XZB|1|f2|G|19, 6XZB|1|f2|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_104 not in the Motif Atlas

Homologous match to HL_6CFJ_106

Geometric discrepancy: 0.1289

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.1

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6XZB|1|f2|C|13
6XZB|1|f2|A|14
6XZB|1|f2|G|15
6XZB|1|f2|C|16
6XZB|1|f2|C|17
6XZB|1|f2|U|17|||A
6XZB|1|f2|G|18
6XZB|1|f2|G|19
6XZB|1|f2|U|20
6XZB|1|f2|A|21
6XZB|1|f2|G|22

Current chains

Chain f2

Deacylated tRNAi(Met)

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain F2

50S ribosomal protein L5