HL_6XZB_108
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YYG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, OMG, YYG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XZB_108 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.4155
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6XZB|1|g2|A|29
6XZB|1|g2|G|30
6XZB|1|g2|A|31
6XZB|1|g2|OMC|32
6XZB|1|g2|U|33
6XZB|1|g2|OMG|34
6XZB|1|g2|A|35
6XZB|1|g2|A|36
6XZB|1|g2|YYG|37
6XZB|1|g2|A|38
6XZB|1|g2|PSU|39
6XZB|1|g2|5MC|40
6XZB|1|g2|U|41
Current chains
- Chain g2
- fMet-Phe-tRNA(Phe)
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L1
- 30S ribosomal protein S12
- Chain f2
- Transfer RNA; tRNA
Coloring options: