HL_6Y0G_056

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6Y0G|1|L5|A|3642, 6Y0G|1|L5|A|3643, 6Y0G|1|L5|U|3644, 6Y0G|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_056 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1838

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6Y0G|1|L5|U|3639
6Y0G|1|L5|U|3640
6Y0G|1|L5|U|3641
6Y0G|1|L5|A|3642
6Y0G|1|L5|A|3643
6Y0G|1|L5|U|3644
6Y0G|1|L5|U|3645
6Y0G|1|L5|A|3646
6Y0G|1|L5|A|3647
6Y0G|1|L5|A|3648
6Y0G|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37