HL_6Y0G_059
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGUAACUAUGACU
- Length
- 13 nucleotides
- Bulged bases
- 6Y0G|1|L5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Y0G_059 not in the Motif Atlas
- Homologous match to HL_8P9A_160
- Geometric discrepancy: 0.2467
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Y0G|1|L5|A|3756
6Y0G|1|L5|G|3757
6Y0G|1|L5|U|3758
6Y0G|1|L5|A|3759
6Y0G|1|L5|A|3760
6Y0G|1|L5|C|3761
6Y0G|1|L5|U|3762
6Y0G|1|L5|A|3763
6Y0G|1|L5|U|3764
6Y0G|1|L5|G|3765
6Y0G|1|L5|A|3766
6Y0G|1|L5|C|3767
6Y0G|1|L5|U|3768
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain A4
- mRNA
- Chain B4
- Transfer RNA; tRNA
- Chain D4
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
Coloring options: