HL_6Y0G_060

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6Y0G|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_060 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1002

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6Y0G|1|L5|U|3796
6Y0G|1|L5|C|3797
6Y0G|1|L5|U|3798
6Y0G|1|L5|A|3799
6Y0G|1|L5|A|3800
6Y0G|1|L5|U|3801
6Y0G|1|L5|U|3802
6Y0G|1|L5|A|3803
6Y0G|1|L5|G|3804

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA