3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
6Y57|1|L5|G|294, 6Y57|1|L5|A|295, 6Y57|1|L5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y57_014 not in the Motif Atlas
Homologous match to HL_5TBW_008
Geometric discrepancy: 0.1073
The information below is about HL_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6Y57|1|L5|C|289
6Y57|1|L5|U|290
6Y57|1|L5|U|291
6Y57|1|L5|G|292
6Y57|1|L5|G|293
6Y57|1|L5|G|294
6Y57|1|L5|A|295
6Y57|1|L5|A|296
6Y57|1|L5|U|297
6Y57|1|L5|G|298

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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