HL_6Y6X_052

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6Y6X|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_052 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.15

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Y6X|1|L5|G|3757
6Y6X|1|L5|U|3758
6Y6X|1|L5|A|3759
6Y6X|1|L5|A|3760
6Y6X|1|L5|C|3761
6Y6X|1|L5|U|3762
6Y6X|1|L5|A|3763
6Y6X|1|L5|U|3764
6Y6X|1|L5|G|3765
6Y6X|1|L5|A|3766
6Y6X|1|L5|C|3767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains