HL_6Y7C_017

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAAC

Length

6 nucleotides

Bulged bases

6Y7C|1|2|U|705

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_017 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2547

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Y7C|1|2|G|703
6Y7C|1|2|C|704
6Y7C|1|2|U|705
6Y7C|1|2|A|733
6Y7C|1|2|A|734
6Y7C|1|2|C|735

Current chains

Chain 2

20S ribosomal RNA

Nearby chains