HL_6Y7C_021

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

6Y7C|1|2|G|901, 6Y7C|1|2|U|908

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_021 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.5768

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6Y7C|1|2|A|900
6Y7C|1|2|G|901
6Y7C|1|2|G|902
6Y7C|1|2|U|903
6Y7C|1|2|G|904
6Y7C|1|2|A|905
6Y7C|1|2|A|906
6Y7C|1|2|A|907
6Y7C|1|2|U|908
6Y7C|1|2|U|909

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain h

Pre-rRNA-processing protein PNO1