HL_6Y7C_034

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6Y7C|1|2|C|1596, 6Y7C|1|2|A|1597

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_034 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3873

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Y7C|1|2|G|1594
6Y7C|1|2|U|1595
6Y7C|1|2|C|1596
6Y7C|1|2|A|1597
6Y7C|1|2|U|1598
6Y7C|1|2|C|1599
6Y7C|1|2|A|1600
6Y7C|1|2|G|1601
6Y7C|1|2|C|1602

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain T

40S ribosomal protein S19-A

Chain d

40S ribosomal protein S29-A