HL_6Y7C_036

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

6Y7C|1|2|G|1780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_036 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.5407

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Y7C|1|2|G|1778
6Y7C|1|2|U|1779
6Y7C|1|2|G|1780
6Y7C|1|2|A|1781
6Y7C|1|2|A|1782
6Y7C|1|2|C|1783

Current chains

Chain 2

20S ribosomal RNA

Nearby chains