HL_6Y7C_043

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

6Y7C|1|2|C|1399

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_043 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.4649

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

13

Unit IDs

6Y7C|1|2|U|1396
6Y7C|1|2|U|1397
6Y7C|1|2|U|1398
6Y7C|1|2|C|1399
6Y7C|1|2|A|1400
6Y7C|1|2|A|1401
6Y7C|1|2|G|1402

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17-A