HL_6Y7C_044

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6Y7C|1|2|G|765, 6Y7C|1|2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_044 not in the Motif Atlas

Homologous match to HL_8CRE_207

Geometric discrepancy: 0.3262

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Y7C|1|2|U|764
6Y7C|1|2|G|765
6Y7C|1|2|U|766
6Y7C|1|2|U|767
6Y7C|1|2|C|768
6Y7C|1|2|A|769
6Y7C|1|2|A|770
6Y7C|1|2|A|771
6Y7C|1|2|G|772

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A