HL_6YAL_030

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6YAL|1|2|U|1296, 6YAL|1|2|G|1298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_030 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2054

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6YAL|1|2|A|1291
6YAL|1|2|U|1292
6YAL|1|2|U|1293
6YAL|1|2|G|1294
6YAL|1|2|A|1295
6YAL|1|2|U|1296
6YAL|1|2|A|1297
6YAL|1|2|G|1298
6YAL|1|2|C|1299
6YAL|1|2|U|1300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein uS19

Chain e

40S ribosomal protein uS14

Chain f

40S ribosomal protein eS31