HL_6YAM_009

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6YAM|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_009 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2007

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6YAM|1|2|G|279
6YAM|1|2|G|280
6YAM|1|2|U|281
6YAM|1|2|G|282
6YAM|1|2|A|283
6YAM|1|2|C|284
6YAM|1|2|U|285
6YAM|1|2|C|286

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain N

40S ribosomal protein uS17